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1.
Eur J Med Genet ; 68: 104919, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38355093

ABSTRACT

Hereditary hemorrhagic telangiectasia (HHT), also known as Rendu-Osler-Weber disease, is a dominant inherited vascular disorder. The clinical diagnosis is based on the Curaçao criteria and pathogenic variants in the ENG and ACVRL1 genes are responsible for most cases of HHT. Four families with a negative targeted gene panel and selected by a multidisciplinary team were selected and whole-genome sequencing was performed according to the recommendations of the French National Plan for Genomic Medicine. Structural variations were confirmed by standard molecular cytogenetic analysis (FISH). In two families with a definite diagnosis of HHT, we identified two different paracentric inversions of chromosome 9, both disrupting the ENG gene. These inversions are considered as pathogenic and causative for the HHT phenotype of the patients. This is the first time structural variations are reported to cause HHT. As such balanced events are often missed by exon-based sequencing (panel, exome), structural variations may be an under-recognized cause of HHT. Genome sequencing for the detection of these events could be suggested for patients with a definite diagnosis of HHT and in whom no causative pathogenic variant was identified.


Subject(s)
Telangiectasia, Hereditary Hemorrhagic , Humans , Telangiectasia, Hereditary Hemorrhagic/diagnosis , Telangiectasia, Hereditary Hemorrhagic/genetics , Telangiectasia, Hereditary Hemorrhagic/pathology , Mutation , Endoglin/genetics , Base Sequence , Chromosomes, Human, Pair 9/genetics , Activin Receptors, Type II/genetics
2.
An. sist. sanit. Navar ; 45(1): e0991, enero-abril 2022. graf, tab
Article in Spanish | IBECS | ID: ibc-202911

ABSTRACT

Se sabe poco sobre las características de los programas de rehabilitación cardíaca implantados en la actualidad en España, por lo que el objetivo de este estudio fue conocer la efectividad de la rehabilitación cardíaca en pacientes con cardiopatía isquémica en España, mediante una revisión sistemática exploratoria de la literatura científica en distintas bases de datos desde 2010 hasta 2018. Se incluyeron 35 artículos cuyo objetivo era medir la efectividad de los programas de rehabilitación cardíaca desde distintas perspectivas. Participaron más del doble de hombres que de mujeres y solo el 8,6% fueron ensayos clínicos. Se observaron mejoras en relación con la mortalidad y las variables fisiológicas y de calidad de vida de los pacientes, pero con resultados dispares en morbilidad, estados de ánimo, mantenimiento de hábitos saludables a largo plazo y rentabilidad de los programas.


Little is known about the characteristics of the cardiac rehabilitation programs currently implemented in Spain, the aim was therefore to know more about the effectiveness of cardiac rehabilitation in patients with ischemic heart disease in Spain, through an exploratory systematic review of the scientific literature on cardiac rehabilitation carried out in different databases from 2010 to 2018. We reviewed 35 articles whose objective was to measure the effectiveness of cardiac rehabilitation programs from different perspectives. More than twice as many men as women participated and only 8.6% were clinical trials. The studies showed improvements in relation to mortality and physiological and quality of life variables, but with discrepant results in morbidity, moods, maintenance of long-term healthy habits and profitability of the programs.


Subject(s)
Humans , Health Sciences , Cardiac Rehabilitation , Systematic Reviews as Topic , Myocardial Ischemia , Secondary Prevention
3.
An Sist Sanit Navar ; 45(1)2022 Apr 27.
Article in Spanish | MEDLINE | ID: mdl-35043786

ABSTRACT

Little is known about the characteristics of the cardiac rehabilitation programs currently implemented in Spain, the aim was therefore to know more about the effectiveness of cardiac rehabilitation in patients with ischemic heart disease in Spain, through an exploratory systematic review of the scientific literature on cardiac rehabilitation carried out in different databases from 2010 to 2018. We reviewed 35 articles whose objective was to measure the effectiveness of cardiac rehabilitation programs from different perspectives. More than twice as many men as women participated and only 8.6% were clinical trials. The studies showed improvements in relation to mortality and physiological and quality of life variables, but with discrepant results in morbidity, moods, maintenance long-term healthy habits and profitability of the programs.


Subject(s)
Cardiac Rehabilitation , Cardiac Rehabilitation/methods , Female , Humans , Male , Quality of Life , Spain
4.
Gac. sanit. (Barc., Ed. impr.) ; 27(4): 325-331, jul.-ago. 2013. tab
Article in English | IBECS | ID: ibc-115271

ABSTRACT

Objective: To develop a Spanish version of the WHO-Composite International Diagnostic Interview (WHO-CIDI) applicable to Spain, through cultural adaptation of its most recent Latin American (LA v 20.0) version. Methods: A 1-week training course on the WHO-CIDI was provided by certified trainers. An expert panel reviewed the LA version, identified words or expressions that needed to be adapted to the cultural or linguistic norms for Spain, and proposed alternative expressions that were agreed on through consensus. The entire process was supervised and approved by a member of the WHO-CIDI Editorial Committee. The changes were incorporated into a Computer Assisted Personal Interview (CAPI) format and the feasibility and administration time were pilot tested in a convenience sample of 32 volunteers. Results: A total of 372 questions were slightly modified (almost 7% of approximately 5000 questions in the survey) and incorporated into the CAPI version of the WHO-CIDI. Most of the changes were minor - but important - linguistic adaptations, and others were related to specific Spanish institutions and currency. In the pilot study, the instrument's mean completion administration time was 2h and 10min, with an interquartile range from 1.5 to nearly 3h. All the changes made were tested and officially approved. Conclusions: The Latin American version of the WHO-CIDI was successfully adapted and pilot-tested in its computerized format and is now ready for use in Spain (AU)


Objetivo: Desarrollar la versión española de la WHO-Composite International Diagnostic Interview (WHO-CIDI) para su uso en España mediante la adaptación cultural de la versión latinoamericana más reciente disponible (LA; v 20.0). Métodos: Se realizó un curso de una semana impartido por entrenadores certificados. Un panel de expertos revisó la versión latinoamericana e identificó las palabras o expresiones que requerían ser adaptadas a las normas culturales o linguísticas de España y se propusieron, por consenso, palabras o expresiones alternativas. El proceso fue supervisado y aprobado por un miembro del Comité Editorial de la WHO-CIDI. Los cambios fueron implementados en el formato informatizado CAPI (Computer Assisted Personal Interview). Un estudio piloto en una muestra de conveniencia de 32 voluntarios permitió calcular los tiempos de administración y viabilidad. Resultados: 372 preguntas fueron modificadas (alrededor de un 7% del total de 5000 preguntas del instrumento completo) e implementadas en la versión CAPI de la WHO-CIDI. La mayoría de las modificaciones fueron adaptaciones lingüísticas menores, pero importantes, y otras se relacionaron con los recursos específicos de España y adaptaciones a la moneda utilizada. En el estudio piloto, la mediana del tiempo de duración de la WHO-CIDI completa fue de 2 horas y 10 minutos, con un rango intercuartil entre 1 hora y 25 minutos y casi 3 horas. Todos los cambios implementados fueron comprobados y aprobados oficialmente. Conclusiones: La version latinoamericana de la WHO-CIDI ha sido adaptada y el formato informático ha sido pilotado con éxito, estando disponible para su utilización en España (AU)


Subject(s)
Humans , Interview, Psychological , Psychometrics/instrumentation , Mental Disorders/diagnosis , Epidemiologic Studies , Cross-Cultural Comparison
5.
Vet Parasitol ; 142(3-4): 248-59, 2006 Dec 20.
Article in English | MEDLINE | ID: mdl-16934406

ABSTRACT

The possible interaction of Cryptosporidium molnari and bacteria in gilthead sea bream (Sparus aurata) was studied. Epidemiological data from a pathological survey under farm conditions were analyzed. In addition, parasite and bacteria burdens were studied in experimental models in which naturally and experimentally parasitized fish were challenged with a particular strain of Vibrio harveyi (H57). All the bacteria species present were studied. Under farm conditions, the parasite was more prevalent when mortality or morbidity cases (study C) occurred than in randomly sampled fish (study B). In study C, parasite abundance was significantly higher in bacteria-negative fish, and total bacteria abundance was significantly higher within non-parasitized fish. V. harveyi and V. splendidus were the most prevalent among bacteria carriers in studies B and C, respectively. In study C, among bacteria carriers, most isolates were slightly more prevalent in parasitized than in non-parasitized fish. Two groups (G1, G2) of naturally parasitized fish were inoculated with H57 by intracoelomic injection (ICI) and by oral intubation (OI). H57 was recovered only in G1 inoculated fish, which had a significantly higher basal abundance of total bacteria, and where the only ones with mortalities. In G1, the mortality rate and the prevalence of other V. harveyi strains different from the H57 molecular type were higher in ICI than in OI fish, and the total bacteria abundance was also significantly higher in ICI fish. C. molnari abundance was significantly higher in G1 than in G2, and also in OI than in ICI fish within G1. When H57 was IC inoculated to fish (G3, from the same farm as G2) experimentally infected with C. molnari, H57 was not recovered from any fish. A low mortality was recorded, and only in those fish inoculated with both pathogens. Also in these fish, the prevalence of infection of C. molnari was higher and histopathological damage to the stomach was greater than in fish inoculated only with the parasite. Therefore, the impact of the parasite would be reduced notably when the bacterial burden or the intensity of parasite infection are low (G2, G3).


Subject(s)
Cryptosporidiosis/veterinary , Cryptosporidium/pathogenicity , Fish Diseases/epidemiology , Sea Bream , Vibrio Infections/veterinary , Vibrio/pathogenicity , Animals , Body Weight , Cryptosporidiosis/complications , Cryptosporidiosis/epidemiology , Cryptosporidium/isolation & purification , Fish Diseases/microbiology , Fish Diseases/parasitology , Fisheries , Prevalence , Random Allocation , Sea Bream/parasitology , Time Factors , Vibrio/isolation & purification , Vibrio Infections/complications , Vibrio Infections/epidemiology
6.
Int J Syst Evol Microbiol ; 55(Pt 6): 2371-2376, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16280499

ABSTRACT

A Gram-negative, slightly halophilic, non-pigmented, strictly aerobic, chemo-organotrophic bacterium was isolated from sea water off the western Mediterranean coast near Valencia (Spain). This strain was able to grow on several organic acids and amino acids added to a minimal medium as carbon sources, but used few carbohydrates or yielded slight growth when sugars were used. Phylogenetic analysis based on an almost complete 16S rRNA gene sequence revealed that strain XSM19T was a member of the Roseobacter group within the 'Alphaproteobacteria', with its closest phylogenetic neighbour being Ruegeria gelatinovorans (97.6 % sequence similarity). Following a polyphasic approach, it was concluded that strain XSM19T represents a new genus and novel species, for which the name Thalassobius mediterraneus sp. nov. is proposed. The type strain is XSM19T (=CECT 5383T=CIP 108400T=CCUG 49438T). It is also proposed that R. gelatinovorans (Rüger & Höfle 1992) Uchino et al. 1999 is reclassified as Thalassobius gelatinovorus comb. nov.


Subject(s)
RNA, Ribosomal, 16S/analysis , Rhodobacteraceae/classification , Seawater/microbiology , Mediterranean Sea , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodobacteraceae/chemistry , Rhodobacteraceae/genetics , Rhodobacteraceae/growth & development , Sequence Analysis, DNA
7.
Int J Syst Evol Microbiol ; 55(Pt 5): 1959-1963, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16166695

ABSTRACT

The type strains of Jannaschia cystaugens (LMG 22015(T)) and Thalassobacter stenotrophicus (CECT 5294(T)) were analysed by means of genomic DNA-DNA hybridization, comparison of 16S rRNA gene sequences and phenotypic properties determined under the same methodological conditions. J. cystaugens LMG 22015(T) showed DNA-DNA relatedness levels of 72% when hybridized with the genomic DNA of T. stenotrophicus CECT 5294(T). Sequence comparisons revealed that the 16S rRNA genes of the two strains had a similarity of 99.8%. The cellular fatty acid and polar lipid compositions of the two strains and their DNA mol% G+C contents were almost identical. Bacteriochlorophyll a (Bchl a) and polyhydroxybutyrate were produced by both strains under the same culture conditions. Their closest phylogenetic neighbours were Jannaschia helgolandensis and Jannaschia rubra; however, the low sequence similarity values (95.7-95.9%) and several important differences in phenotypic traits (ionic requirements, Bchl a production and polar lipids) support the distinction between the genera Thalassobacter and Jannaschia. Thus, we propose the unification of J. cystaugens (LMG 22015(T)) and T. stenotrophicus (CECT 5294(T)) as Thalassobacter stenotrophicus (type strain, CECT 5294(T)=DSM 16310(T)). An emended description of the genus Thalassobacter is also presented.


Subject(s)
Rhodobacteraceae/classification , Bacterial Typing Techniques , Bacteriochlorophyll A/metabolism , DNA, Bacterial/genetics , Genes, rRNA , Hydroxybutyrates/metabolism , Nucleic Acid Hybridization , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodobacteraceae/genetics , Rhodobacteraceae/physiology
8.
Int J Syst Evol Microbiol ; 55(Pt 2): 631-636, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15774635

ABSTRACT

A Gram-negative, slightly halophilic, non-pigmented, strictly aerobic, chemo-organotrophic bacterium was isolated from Mediterranean sea water off the Spanish coast near Valencia. This strain was poorly reactive, being unable to grow in most carbon sources analysed in minimal medium. However, good growth was observed when more complex media and longer incubation times were used. Phylogenetic analysis based on an almost complete 16S rRNA gene sequence placed strain 2SM4(T) within the Roseobacter group, in the vicinity of uncultured bacteria described as gall symbionts of several species of the red alga Prionitis. Sequence similarity values between strain 2SM4(T) and the closest neighbouring species were below 95.0 %. The cellular fatty acid composition of the Mediterranean strain confirmed its position within the 'Alphaproteobacteria', sharing 18 : 1omega7c as the major cellular fatty acid. The phylogenetic distance from any taxon with a validly published name and also a number of distinguishing features support the designation of strain 2SM4(T) as representing a novel genus and species, for which the name Nereida ignava gen. nov., sp. nov. is proposed. The type strain is 2SM4(T) (=CECT 5292(T)=DSM 16309(T)=CIP 108404(T)=CCUG 49433(T)).


Subject(s)
Alphaproteobacteria/classification , Rhodophyta/microbiology , Roseobacter/classification , Seawater/microbiology , Symbiosis , Aerobiosis , Alphaproteobacteria/chemistry , Alphaproteobacteria/genetics , Alphaproteobacteria/growth & development , Culture Media , DNA, Ribosomal/analysis , Fatty Acids/analysis , Mediterranean Sea , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Roseobacter/genetics , Sequence Analysis, DNA
9.
Int J Syst Evol Microbiol ; 55(Pt 2): 649-653, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15774638

ABSTRACT

A Gram-negative, slightly halophilic, strictly aerobic, chemo-organotrophic bacterium was isolated from Mediterranean sea water near Valencia (Spain). Comparison of the almost complete 16S rRNA gene sequence showed that strain 4SM3(T) belonged to the Roseobacter group, with Jannaschia helgolandensis as its closest relative, with a similarity of 98.7 %. DNA-DNA hybridization analysis showed that the Mediterranean isolate had a level of relatedness of less than 42 % with J. helgolandensis and therefore that it represented a novel species of the genus Jannaschia. Phenotypic characteristics gave further evidence that the two organisms are not related at the species level. Isolate 4SM3(T) grows on solid media as irregular pink-red colonies that penetrate into the agar. Cells are rods, motile by a tuft of polar flagella. The DNA base composition is 64.6 mol% G+C. Morphological, physiological and genotypic differences from related species support the description of a novel species, Jannaschia rubra sp. nov., with strain 4SM3(T) (=CECT 5088(T)=DSM 16279(T)) as the type strain.


Subject(s)
Pigments, Biological/metabolism , Rhodobacteraceae/classification , Seawater/microbiology , DNA, Bacterial/analysis , DNA, Ribosomal , Genes, rRNA , Genotype , Mediterranean Sea , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Phylogeny , RNA, Ribosomal, 16S , Rhodobacteraceae/genetics , Rhodobacteraceae/isolation & purification , Rhodobacteraceae/metabolism , Sequence Analysis, DNA
10.
Int J Syst Evol Microbiol ; 55(Pt 1): 105-110, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15653862

ABSTRACT

A Gram-negative, slightly halophilic, strictly aerobic, chemo-organotrophic bacterium was isolated from Mediterranean sea water near Valencia (Spain). 16S rRNA gene sequence comparisons showed that the isolate represented a separate branch within the alpha-3 subclass of the Proteobacteria, now included within the order 'Rhodobacterales'. Jannaschia helgolandensis was the closest relative, but their low sequence similarity and other features indicated that they were not related at the genus level. Isolate 5SM22T produced bacteriochlorophyll a and grew on solid media as regular salmon-pink colonies. Cells are motile rods, with polar flagella. The DNA G+C content is 59.1 mol%. Morphological, physiological and genotypic differences from related, thus far known genera support the description of Thalassobacter stenotrophicus gen. nov., sp. nov. with strain 5SM22T (=CECT 5294T=DSM 16310T) as the type strain.


Subject(s)
Rhodobacteraceae/classification , Rhodobacteraceae/isolation & purification , Seawater/microbiology , Bacteriochlorophyll A/metabolism , Culture Media , DNA, Bacterial/analysis , DNA, Ribosomal/analysis , Genes, rRNA , Mediterranean Sea , Molecular Sequence Data , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodobacteraceae/genetics , Rhodobacteraceae/growth & development , Sequence Analysis, DNA , Spain
11.
Syst Appl Microbiol ; 27(5): 535-40, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15490554

ABSTRACT

A new Vibrio species, Vibrio ponticus, is proposed to accommodate four marine bacteria isolated from sea water, mussels and diseased sea bream (Sparus aurata), at the Mediterranean coast of Spain. Strains are Gram negative, slightly halophilic bacteria that require Na+ ion for growth, oxidase and catalase positive, negative for arginine dihydrolase and ornithine decarboxylase but positive for lysine decarboxylase and indole, and utilize beta-hydroxybutyrate as a sole carbon source. Phylogenetic analysis locate these marine bacteria in the vicinity of the V. fluvialis-V. furnissii clade, sharing with these two species 16S rDNA sequence similarities slightly above 97% (97.1 and 97.3%, respectively). DNA-DNA hybridisation values confirm that the four strains form a genospecies and represent a new species in the genus Vibrio. We propose strain 369T (CECT 5869T, DSM 16217T) as the type strain.


Subject(s)
Bivalvia/microbiology , Sea Bream/microbiology , Seawater/microbiology , Vibrio/classification , Vibrio/isolation & purification , 3-Hydroxybutyric Acid/metabolism , Animals , Carboxy-Lyases/analysis , Catalase/analysis , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , DNA, Ribosomal/chemistry , DNA, Ribosomal/isolation & purification , Fatty Acids/analysis , Gentian Violet , Hydrolases/analysis , Indoles/analysis , Mediterranean Sea , Molecular Sequence Data , Nucleic Acid Hybridization , Ornithine Decarboxylase/analysis , Oxidoreductases/analysis , Phenazines , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Spain , Vibrio/chemistry , Vibrio/physiology , Vibrio Infections/veterinary
12.
Syst Appl Microbiol ; 26(2): 284-92, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12866856

ABSTRACT

Vibrio harveyi was isolated from internal organs or ulcers of diseased and apparently healthy gilthead sea bream (Sparus aurata) and European sea bass (Dicentrarchus labrax) cultured in several fish farms located on the Spanish Mediterranean coast. The prevalence of the bacterium was significantly higher in European sea bass than in gilthead sea bream, and was closely related to the season in both fish species, occurring almost exclusively on warm months (June to November). After phenotypic characterization, a selection of forty five isolates from gilthead sea bream, sea bass, and several isolates previously obtained from common dentex (Dentex dentex) of the same area, were molecularly typed by automated ribotyping and random amplified polymorphic DNA (RAPD) analysis. Cluster analysis of data established 8 RAPD types and 13 ribotypes among wild isolates, and the combination of both techniques allowed to define fourteen different groups and a clear discrimination of all outbreaks and samplings. Several strains isolated from diseased gilthead sea bream and sea bass and also from asymptomatic sea bream, were tested for virulence in both fish species by intracoelomic injection. All the isolates (11) were pathogenic for sea bass, with nine out of the eleven LD50 values ranging from 1.5 x 10(5) to 1.6 x 10(6) cfu/fish. Gilthead sea bream was unaffected by the seven tested strains, even by those more virulent for sea bass, and only one strain caused a 10% mortality at 4.2 x 10(7) cfu/fish. This is the first report on virulence of V. harveyi for sea bass.


Subject(s)
Bass/microbiology , Fish Diseases/microbiology , Perciformes/microbiology , Sea Bream/microbiology , Vibrio Infections/veterinary , Vibrio/isolation & purification , Animals , Bacterial Typing Techniques , Carrier State/microbiology , Carrier State/veterinary , DNA, Bacterial/analysis , DNA, Bacterial/genetics , Fisheries , Phenotype , Random Amplified Polymorphic DNA Technique , Ribotyping , Vibrio/classification , Vibrio/genetics , Vibrio/pathogenicity , Vibrio Infections/microbiology , Virulence
13.
Dis Aquat Organ ; 54(2): 119-26, 2003 Mar 31.
Article in English | MEDLINE | ID: mdl-12747637

ABSTRACT

A bacteriological survey of gilthead sea bream Sparus aurata from different fish farms and culture systems on the Spanish Mediterranean coast was conducted. Three different studies were performed. Study A included hatchery-reared larvae; Study B, periodic examination of randomly sampled growing fish; and Study C, growing fish sampled only during mortality/morbidity events. In Studies B and C, sea cages, earth ponds and indoor tanks were surveyed, and in both cases diseased (showing clinical signs) and non-diseased fish were included. In Study A, a shift from Vibrio spp. (30 d after hatching) to oxidative species (60 d after hatching) was detected, and no mortality events were registered. The percentage of fish yielding bacterial growth were similar in Studies B and C, reaching 57.4 and 61.3%, respectively. A statistically significant relationship between the bacterial carriage and the type of facility was only found in Study B, showing that fish from sea cages had a higher bacterial occurrence than fish from other facilities. A statistically significant relationship between bacterial carriage and signs of disease was found, although the pattern differed in each study. Thus, in Study B only 36.2% of fish yielding abundant bacterial growth were diseased, versus 68.0% in Study C. In total, 25.0% of the fish examined were diseased. Bacterial species composition was similar in asymptomatic and diseased fish, except for a group of V. ichthyoenteri-like isolates that occurred almost exclusively in asymptomatic fish. Dominant bacterial species were V. harveyi and V. splendidus, followed by V. ichthyoenteri-like isolates, Photobacterium damselae ssp. damselae and V. fisheri. Non-fermenters were less frequent but, among them, unidentified halophilic Cytophaga-Flavobacterium isolates and Pseudoalteromonas haloplanktis were the most abundant. An association of individual species with disease was not clear, which suggests the involvement of mixed infections.


Subject(s)
Carrier State/veterinary , Fish Diseases/epidemiology , Sea Bream , Vibrio Infections/veterinary , Animals , Aquaculture , Carrier State/epidemiology , Carrier State/microbiology , Colony Count, Microbial , Fish Diseases/microbiology , Larva/microbiology , Photobacterium/isolation & purification , Photobacterium/pathogenicity , Spain/epidemiology , Vibrio/isolation & purification , Vibrio/pathogenicity , Vibrio Infections/epidemiology , Vibrio Infections/microbiology , Virulence , Water Microbiology
14.
J Appl Microbiol ; 93(4): 681-8, 2002.
Article in English | MEDLINE | ID: mdl-12234352

ABSTRACT

AIMS: The aim of the present study was to characterize subspecifically Photobacterium damselae subsp. damselae strains isolated from cultured Sparus aurata and Dicentrarchus labrax by means of phenotypic and molecular typing techniques (amplified fragment length polymorphism, AFLP). METHODS AND RESULTS: Seventy-one strains of P. damselae subsp. damselae were isolated from 38 cultured fishes at different fish farms located on the Mediterranean coast near Valencia, Spain. Most fish studied were asymptomatic and some were recovered during infectious outbreaks. Phenotypic characterization revealed a considerable degree of variability within the subspecies, including some characters, such as production of urease, which are used to differentiate P. damselae subsp. damselae from P. damselae subsp. piscicida. Genetic characterization was conducted on a selection of 33 strains, including two reference strains. Dice coefficient (Sd) and the unweighted pair group method with average linkage (UPGMA) were used for numerical analysis of banding patterns. AFLP type was defined on the basis of 100% similarity in the dendrogram obtained, yielding 24 distinct AFLP profiles. At 70% similarity, 13 clusters were defined, thus confirming the great variability observed for the phenotypic traits. CONCLUSIONS: The AFLP variability shown by the isolates was high enough to discriminate between different strains which colonize the same fish. However, closely related AFLP types were usually derived from strains isolated at the same fish farm, indicating an epidemiological relationship. SIGNIFICANCE AND IMPACT OF THE STUDY: This study has confirmed that the AFLP technique allows discrimination of individual strains within P. damselae subsp. damselae for epidemiological studies, and that this subspecies exhibits greater variability than that described for subspecies piscicida.


Subject(s)
Fish Diseases/epidemiology , Gram-Negative Bacterial Infections/veterinary , Perciformes/microbiology , Photobacterium/classification , Polymorphism, Restriction Fragment Length , Animals , Aquaculture , Bacterial Typing Techniques , DNA, Bacterial/analysis , Fish Diseases/microbiology , Gram-Negative Bacterial Infections/epidemiology , Gram-Negative Bacterial Infections/microbiology , Phenotype , Photobacterium/genetics , Photobacterium/isolation & purification , Photobacterium/metabolism
15.
Int J Syst Evol Microbiol ; 52(Pt 4): 1325-1329, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12148647

ABSTRACT

Two Gram-negative, aerobic, heterotrophic, marine bacteria, isolated from Mediterranean sea water off the coast near Valencia (Spain), were the object of this study. These non-motile, yellow-pigmented, rod-shaped strains have been studied by means of DNA-DNA hybridization, 16S rRNA sequencing and cultural and physiological features. Phylogenetic analysis showed that both strains belong to the phylum Cytophaga-Flavobacterium-Bacteroides, and their closest neighbour is the psychrophilic bacterium Gelidibacter algens. The two strains differ from G. algens in their mesophilic behaviour, hydrolytic pattern and use of different carbon sources. There is 31% DNA-DNA hybridization between the proposed type strain and G. algens, and both isolates show 97.5% 16S rDNA similarity to G. algens. They represent a novel species of the genus Gelidibacter, for which the name Gelidibacter mesophilus sp. nov. is proposed, with strain 2SM29T (= CECT 5103T = DSM 14095T) as the type strain.


Subject(s)
Gram-Negative Aerobic Bacteria/classification , Seawater/microbiology , Culture Media , DNA, Ribosomal/analysis , Gram-Negative Aerobic Bacteria/genetics , Gram-Negative Aerobic Bacteria/physiology , Mediterranean Sea , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Phylogeny , Pigments, Biological/metabolism , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Spain
16.
J Appl Microbiol ; 93(3): 438-47, 2002.
Article in English | MEDLINE | ID: mdl-12174042

ABSTRACT

AIMS: A numerical taxonomic study of halophilic Vibrio isolated from healthy and brown ring disease (BRD) affected manila clams (Ruditapes philippinarum), harvested from the Atlantic coast of south-western Spain, was performed. METHODS AND RESULTS: Characterization of 123 presumptive Vibrio spp. was carried out using 94 phenotypic tests. Simple matching and Jaccard similarity coefficients were used for numerical analysis. Cluster analysis by the unweighted pair group method with arithmetic averages yielded 15 phena defined at 0.81 similarity. Large phena corresponded to Vibrio tubiashii, V. splendidus biotype I and V. harveyi (phena 1, 5 and 9, respectively). The species V.splendidus biotype II, V. natriegens, V. mediterranei and V. alginolyticus were also represented. The inhibitory effect of diffusible extracellular products of the isolates against 27 strains of V.tapetis, the aetiological agent of BRD, was also investigated. Only five V. tubiashii isolates inhibited the growth of V. tapetis strains. The antimicrobial effect was inhibited by heating and depended on the culture medium. CONCLUSIONS: The main Vibrio species associated with manila clams were V. tubiashii, V.spendidus and V. harveyi. The antagonistic relationship established between V. tapetis and the Vibrio spp. clam microbiota may explain the failure of isolation in plating medium of V.tapetis from BRD-affected clams on the south Atlantic coast of Spain. SIGNIFICANCE AND IMPACT OF THE STUDY: Some of the strains isolated from manila clams correspond to agarolytic strains that constitute phenon 7 and they do not fit into any of the currently described Vibrio species.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bivalvia/microbiology , Vibrio/classification , Animals , Atlantic Ocean , Classification/methods , Cluster Analysis , Culture Media , Microbial Sensitivity Tests , Phenotype , Spain , Vibrio/drug effects , Vibrio/isolation & purification
17.
Int J Syst Evol Microbiol ; 51(Pt 4): 1283-1289, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11491324

ABSTRACT

A new genus and species are proposed for two halophilic, strictly aerobic, chemo-organotrophic, marine bacterial strains. These bacteria are gram-negative, motile rods isolated from oysters cultivated off the Mediterranean coast at Valencia (Spain). They produce green/blue-green diffusible pigment. The G+C content of the DNA of the proposed type strain (XOM25T) is 48.4 mol %. A 16S rRNA gene sequence analysis of the two strains has shown that the new isolates represent a branch within the gamma-Proteobacteria, close to the genus Colwellia. The type species of the new genus is Thalassomonas viridans gen. nov., sp. nov., with the type strain XOM25T (= CECT 5083T = DSM 13754T).


Subject(s)
Gammaproteobacteria/classification , Gammaproteobacteria/isolation & purification , Animals , Base Composition , Base Sequence , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Fatty Acids/analysis , Gammaproteobacteria/genetics , Gammaproteobacteria/metabolism , Molecular Sequence Data , Ostreidae/microbiology , Phylogeny , Pigments, Biological/metabolism , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Seawater/microbiology , Spain
18.
Int J Syst Evol Microbiol ; 51(Pt 4): 1449-1456, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11491345

ABSTRACT

Twelve phenotypically similar marine bacteria have been studied by means of ribotyping, DNA-DNA hybridization and cultural and physiological characterization. Phylogenetic analysis has been performed of the 16S and 23S rRNA genes of two representative strains. Phylogenetically, they belong to the Vibrio/Photobacterium branch of the gamma-Proteobacteria and they share all of the properties that define the genus Vibrio. The strains represent a new Vibrio species that is phenotypically similar to Vibrio splendidus. However, resistance to the vibriostatic agent 0129 and production of acid from several carbohydrates allow differentiation between V. splendidus and the proposed new species. The DNA G+C content of the proposed type strain is 44.0 mol %. The name Vibrio lentus sp. nov. is proposed for the new species and strain 40M4T (= CECT 5110T = DSM 13757T) is the type strain.


Subject(s)
Ostreidae/microbiology , Vibrio/classification , Vibrio/genetics , Animals , Base Composition , Base Sequence , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Mediterranean Sea , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Phylogeny , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 23S/genetics , Ribotyping , Species Specificity , Vibrio/isolation & purification
19.
Int J Syst Evol Microbiol ; 51(Pt 6): 2031-6, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11760944

ABSTRACT

It is proposed that the new Vibrio species Vibrio agarivorans accommodates two agarolytic, halophilic, fermentative bacterial strains isolated from Mediterranean sea water. The cells were gram-negative, oxidase-positive, polarly flagellated bacilli that fermented glucose without gas production and that produced no decarboxylases. They used a wide range of compounds as sole carbon and energy sources. The DNA G+C content was 44.8 mol%. Phylogenetic analysis based on complete 16S and 23S rDNA sequences revealed that the strains belong to the gamma-Proteobacteria, and are specifically related to Vibrio species. Their nearest relatives were species of the Vibrio fischeri group, sharing 16S rDNA sequence similarities below 97% with the agarolytic strains. The type strain is 289T (= CECT 5085T = DSM 13756T).


Subject(s)
Agar/metabolism , Phylogeny , Seawater/microbiology , Vibrio/classification , Vibrio/genetics , DNA, Ribosomal/genetics , Mediterranean Sea , Molecular Sequence Data , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal, 23S/genetics , Sequence Analysis, DNA , Vibrio/isolation & purification , Vibrio/metabolism
20.
Syst Appl Microbiol ; 23(3): 373-5, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11108016

ABSTRACT

A critical evaluation of published and own taxonomic and phylogenetic studies on Vibrio pelagius showed substantial diversity of strains received as type strains from various Culture Collections. The comparison of data based upon 16S rRNA sequence analyses, earlier genomic DNA-DNA similarity studies as well as physiological investigations and the original description indicate that Vibrio pelagius strains CECT 4202T and ATCC 25916T really represent the originally described type species whereas strains NCIMB 1900T and CIP 102762T highly likely are representatives of Vibrio natriegens.


Subject(s)
Vibrio/classification , Bacteriological Techniques/standards , Biological Specimen Banks/standards , Molecular Sequence Data , Vibrio/genetics
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